Information for 4-CMBNBCCMAGCAGVMA (Motif 5)

A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A
Reverse Opposite:
G C A T A C G T A G T C G T A C G C A T T A C G G A T C A C G T A C T G C A T G A T C G T C A G C A T G T A G C C A T G T A C G
p-value:1e-12
log p-value:-2.822e+01
Information Content per bp:1.568
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif7.78%
Number of Background Sequences with motif1336.7
Percentage of Background Sequences with motif2.74%
Average Position of motif in Targets47.6 +/- 21.7bp
Average Position of motif in Background49.0 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:5
Orientation:forward strand
Alignment:CMBNBCCMAGCAGVMA-
-----CACAGCAGGGGG
 A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CMBNBCCMAGCAGVMA-
--CCACACAGCAGGAGA
 A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CMBNBCCMAGCAGVMA-
--CCACACAGCAGGAGA
 A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CMBNBCCMAGCAGVMA-
--GAGCACAGCAGGACA
 A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A A C G T
A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CMBNBCCMAGCAGVMA---
----DCHCAGCAGGRGGCC
 A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CMBNBCCMAGCAGVMA
----DCTCAGCAGG--
 A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A
A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CMBNBCCMAGCAGVMA
-ATTTCCCAGVAKSCY
 A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A
A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CMBNBCCMAGCAGVMA
---NNVVCAGCTGBN-
 A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A
A C G T A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CMBNBCCMAGCAGVMA
----NAHCAGCTGD--
 A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A
A C G T A C G T A C G T A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CMBNBCCMAGCAGVMA
-------CAGCTGNT-
 A T G C G T A C A T C G G T A C A G T C A T G C G T A C T G A C T G C A C T A G A T G C C G T A C A T G T C A G T G C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T