Information for 11-TGCATTGACC (Motif 48)

A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C T G A G T C C G T A
p-value:1e-5
log p-value:-1.209e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets86.7 +/- 4.6bp
Average Position of motif in Background24.8 +/- 13.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:TGCATTGACC-
-----TGACCT
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGCATTGACC-------
NNANTTGACCCCTNNNN
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:TGCATTGACC---
-----TGACCYCT
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGCATTGACC--
AGGTCANTGACCTN
 A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATTGACC--
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGCATTGACC-------
-NNCNTGACCCCGCTCT
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:TGCATTGACC---
-----TGACCTYA
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGCATTGACC-------
TGTCGTGACCCCTTAAT
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:TGCATTGACC-----
-----TGACCTTGAT
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGCATTGACC-
TGACCTTGACCT
 A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A A G T C A G T C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T