Information for 19-RAGCAAAGTTCAA (Motif 43)

C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T C T A G C G T A C G T A A G T C A C G T A C G T A G C T T A C G G T A C A C G T A G T C
p-value:1e-7
log p-value:-1.667e+01
Information Content per bp:1.811
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif20.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets66.3 +/- 31.5bp
Average Position of motif in Background42.0 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---RAGCAAAGTTCAA
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----RAGCAAAGTTCAA
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RAGCAAAGTTCAA-
GGGGTCAAAGTCCAAT
 A C G T A C G T C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:RAGCAAAGTTCAA
ANGNAAAGGTCA-
 C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RAGCAAAGTTCAA---
GGCAAAAGTCCAATAA
 C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RAGCAAAGTTCAA---
TCTCAAAGGTCACCTG
 C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:RAGCAAAGTTCAA---
TCTCAAAGGTCACGAG
 C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Tcf7/MA0769.1/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:RAGCAAAGTTCAA---
----AAAGATCAAAGG
 C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:RAGCAAAGTTCAA
---CAAAGGTCAG
 C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---RAGCAAAGTTCAA-
AAAGGTCAAAGGTCAAC
 A C G T A C G T A C G T C T A G C G T A A C T G A T G C C T G A C G T A C G T A T A C G A C G T C G A T A G T C C G T A C G T A A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C