Information for 18-GTTGCCAGARCTR (Motif 39)

A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
Reverse Opposite:
A G T C C G T A A T C G A G C T G A C T T G A C C G A T A C T G A T C G A T G C G T C A C T G A T A G C
p-value:1e-7
log p-value:-1.821e+01
Information Content per bp:1.687
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.88%
Number of Background Sequences with motif135.1
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets45.8 +/- 22.4bp
Average Position of motif in Background50.0 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTTGCCAGARCTR
CTTGGCAA-----
 A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GTTGCCAGARCTR
-ATGCCAGACN--
 A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCAGARCTR
GGTTGGCAT-----
 A C G T A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGCCAGARCTR
NGTAGGTTGGCATNNN--
 A C G T A C G T A C G T A C G T A C G T A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCAGARCTR
NNTTGGCANN----
 A C G T A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCAGARCTR
NGTTGCCATGGCAA
 A C G T A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTTGCCAGARCTR
NTTGGCANN----
 A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCAGARCTR
GGTTGCCATGGCAA
 A C G T A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCAGARCTR
ARNTGACA------
 A C G T A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GTTGCCAGARCTR
-TTGACAGC----
 A T C G A G C T C A G T A T C G T A G C A G T C C G T A A C T G C T G A C T G A A T G C C G A T T C A G
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T