Information for 13-CACHAAGCCAACA (Motif 29)

A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A
Reverse Opposite:
A C G T A T C G A C G T A C G T A C T G A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C T G
p-value:1e-8
log p-value:-1.993e+01
Information Content per bp:1.849
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.0 +/- 22.7bp
Average Position of motif in Background51.8 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RREB1/MA0073.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CACHAAGCCAACA-------
CCCCAAACCACCCCCCCCCA
 A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CACHAAGCCAACA
TGGCACCATGCCAA--
 A C G T A C G T A C G T A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CACHAAGCCAACA---
----AAACAAACATTC
 A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CACHAAGCCAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CACHAAGCCAACA
---WAAGTAAAYA
 A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A
A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CACHAAGCCAACA--
TGCCAAAATAAACANN
 A C G T A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Foxa2/MA0047.2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CACHAAGCCAACA
-NCTAAGTAAACA
 A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CACHAAGCCAACA
---TAATCCCN--
 A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CACHAAGCCAACA
-CTTAATCCC---
 A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A
A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CACHAAGCCAACA
-GCTAATCC----
 A G T C G T C A A G T C G C A T C G T A C G T A C T A G A G T C A G T C G T C A G T C A A T G C C G T A
A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T