Information for 12-GGACAGGGCAAAA (Motif 28)

A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A
Reverse Opposite:
A G C T A C G T A C G T C G A T A C T G G T A C A G T C A G T C C G A T A C T G A G C T A T G C A T G C
p-value:1e-8
log p-value:-1.995e+01
Information Content per bp:1.709
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.89%
Number of Background Sequences with motif300.4
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets36.6 +/- 20.0bp
Average Position of motif in Background49.3 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGACAGGGCAAAA
ANGNAAAGGTCA---
 A C G T A C G T A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GGACAGGGCAAAA
TAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGACAGGGCAAAA-----
--AAAGGTCAAAAGGTCA
 A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGACAGGGCAAAA-
TCTCAAAGGTCACGAG
 A C G T A C G T A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGACAGGGCAAAA
---AAGGTCAC--
 A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GGACAGGGCAAAA
GTAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C G T A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGACAGGGCAAAA
--TRAGGTCA---
 A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GGACAGGGCAAAA
TGGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGACAGGGCAAAA
TGGGGAAGGGCM---
 A C G T A C G T A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGACAGGGCAAAA
-CAAAGGTCAG--
 A T C G A T C G C T G A G T A C G C T A A C T G C T A G C A T G G T A C C G T A T G C A T C G A C T G A
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T