Information for 5-TGATTGCTGC (Motif 27)

A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C T C G A A C T G T A G C G T C A G C T A A C G T A G T C C G T A
p-value:1e-8
log p-value:-2.020e+01
Information Content per bp:1.845
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.88%
Number of Background Sequences with motif116.3
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets57.0 +/- 21.7bp
Average Position of motif in Background47.0 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TGATTGCTGC
TTGATTGN---
 A C G T A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C
G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----TGATTGCTGC--
TNNNATGATTTCNNCNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TGATTGCTGC
TTTGATTGATGN
 A C G T A C G T A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGATTGCTGC
TGATTGATGA
 A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TGATTGCTGC--
NNANTGATTGATNTTN
 A C G T A C G T A C G T A C G T A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGATTGCTGC-
ATGATKGATGRC
 A C G T A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Hmx1/MA0896.1/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------TGATTGCTGC-
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------TGATTGCTGC-
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------TGATTGCTGC-
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGATTGCTGC
GTTAATGGCC--
 A C G T A C G T A C G T A C T G T C G A C G A T A C G T A T C G A G T C A C G T A C T G A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T