Information for 12-TGGCARATCTSCCAWT (Motif 16)

A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
Reverse Opposite:
C T G A C G T A A G C T A C T G C T A G A T C G G T C A A C T G G C T A G C A T A G T C A C G T A T C G A G T C G T A C C T G A
p-value:1e-10
log p-value:-2.384e+01
Information Content per bp:1.711
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.2 +/- 17.5bp
Average Position of motif in Background60.3 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGGCARATCTSCCAWT
TGGCACCATGCCAA--
 A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGGCARATCTSCCAWT
CTTGGCAA----------
 A C G T A C G T A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TGGCARATCTSCCAWT
NNTTGGCANN---------
 A C G T A C G T A C G T A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGGCARATCTSCCAWT
CSTGGGAAAD--------
 A C G T A C G T A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TGGCARATCTSCCAWT
CTTGGCANNNTGCCAA--
 A C G T A C G T A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGGCARATCTSCCAWT
TTGGCA-----------
 A C G T A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGGCARATCTSCCAWT
-GGGAAATCCCCN---
 A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TGGCARATCTSCCAWT
NTTGGCANN---------
 A C G T A C G T A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TGGCARATCTSCCAWT
GGTTGGCAT----------
 A C G T A C G T A C G T A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--TGGCARATCTSCCAWT
NATGGAAAAN--------
 A C G T A C G T A G C T A C T G A C T G A T G C C G T A T C A G C G T A C G A T A G T C A C G T A T G C A G T C G T A C C T G A G C A T A G C T
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T