Information for 1-GGCGTTGCCCTTTTAA (Motif 4)

C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A G C T A C T G A C T A G T A C G A C T G G T A C T C G A G T C A A T G C A T C G A T G C A G T C
p-value:1e-16
log p-value:-3.782e+01
Information Content per bp:1.751
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.1 +/- 17.3bp
Average Position of motif in Background56.9 +/- 9.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.60
Offset:8
Orientation:forward strand
Alignment:GGCGTTGCCCTTTTAA----
--------CCTTTTATAGNC
 C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGCGTTGCCCTTTTAA-
--CCTTGCAATTTTTNN
 C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A A C G T
A C G T A C G T A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.58
Offset:7
Orientation:forward strand
Alignment:GGCGTTGCCCTTTTAA-
-------NGCAATTAAA
 C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.56
Offset:11
Orientation:reverse strand
Alignment:GGCGTTGCCCTTTTAA-
-----------TTTAAT
 C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:5
Score:0.56
Offset:9
Orientation:forward strand
Alignment:GGCGTTGCCCTTTTAA----
---------ATATTAATTAA
 C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PB0184.1_Tbp_2/Jaspar

Match Rank:6
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GGCGTTGCCCTTTTAA------
-------CCGATTTAAGCGACC
 C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

Barhl1/MA0877.1/Jaspar

Match Rank:7
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GGCGTTGCCCTTTTAA-
-------NNCAATTANN
 C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

Rarg/MA0859.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GGCGTTGCCCTTTTAA----
----TTGACCTTTTGACCTT
 C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

PB0109.1_Bbx_2/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GGCGTTGCCCTTTTAA------
-----NNNNCTGTTAACNNTNN
 C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

RARA/MA0729.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGCGTTGCCCTTTTAA----
--CATTGACCTTTTGACCTC
 C T A G T A C G A T G C T A C G A C G T A G C T A C T G A G T C A T G C A G T C A G C T C A G T A C G T A C G T G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C