Information for 7-TTGTCTGCGT (Motif 11)

A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T
Reverse Opposite:
T C G A T G A C A C T G A G T C C G T A A C T G C G T A A T G C C G T A G T C A
p-value:1e-9
log p-value:-2.122e+01
Information Content per bp:1.851
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif71.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets44.0 +/- 30.6bp
Average Position of motif in Background53.5 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TTGTCTGCGT
TWGTCTGV--
 A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTGTCTGCGT
VBSYGTCTGG--
 A C G T A C G T A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTGTCTGCGT--
NNNNTTGTGTGCTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTGTCTGCGT
CTGTCTGG--
 A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTGTCTGCGT---
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------TTGTCTGCGT
NNNCCATTGTGTNAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTGTCTGCGT--
CCATTGTATGCAAAT
 A C G T A C G T A C G T A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TTGTCTGCGT
ANTCCTTTGTCTNNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TTGTCTGCGT-
-----TGCGTG
 A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G

PB0177.1_Sox7_2/Jaspar

Match Rank:10
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------TTGTCTGCGT-----
GTGCTAATTGTGTGTGTACGCT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A C T A G T C A C G T A C T G A G T C A C T G A G C T A C G T A C G T A C G T A C G T A C G T
A C T G C G A T T A C G A T G C C G A T G T C A C G T A G C A T G C A T T C A G G C A T T A C G G A C T T A C G G C A T T C A G A C G T C T G A G A T C A C T G T A G C A G C T