Information for 6-TTTATAAAAGCAGTAT (Motif 8)

G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
Reverse Opposite:
T C G A A G C T T C G A G A T C A C G T A T C G G A T C G A C T C A G T C G A T A C G T C T G A C G A T C G T A C T G A C G T A
p-value:1e-12
log p-value:-2.778e+01
Information Content per bp:1.678
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.43%
Number of Background Sequences with motif50.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets46.9 +/- 22.8bp
Average Position of motif in Background51.1 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTATAAAAGCAGTAT
NCYAATAAAA-------
 A C G T G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTTATAAAAGCAGTAT
CCYMATAAAA-------
 A C G T G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTTATAAAAGCAGTAT
CCAATAAAAA------
 G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTTATAAAAGCAGTAT
CTACCAATAAAATTCT---
 A C G T A C G T A C G T G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTTATAAAAGCAGTAT
-GTATAAAAGGCGGGG
 G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTTATAAAAGCAGTAT
-GTATAAAAGGCGGGG
 G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTTATAAAAGCAGTAT
GCAATAAAA-------
 G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTTATAAAAGCAGTAT
GTCATAAAAN------
 G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TTTATAAAAGCAGTAT
GGTAATAAAAA------
 A C G T G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTTATAAAAGCAGTAT
CCAATAAAAA------
 G C A T A G C T G A C T G C T A G A C T G T C A C G T A G C T A C T G A C T A G T A G C C G T A C T A G A G C T T C G A A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T