Information for 1-CACAGAGTTTTCT (Motif 3)

A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T
Reverse Opposite:
C T G A A C T G C G T A C T G A C G T A G T C A A G T C A C G T A T G C A C G T A C T G A C G T T C A G
p-value:1e-10
log p-value:-2.399e+01
Information Content per bp:1.784
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 30.0bp
Average Position of motif in Background24.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CACAGAGTTTTCT-
GVACAGNMTGTYCTB
 A C G T A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CACAGAGTTTTCT-
GRACAGWMTGTYCTB
 A C G T A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CACAGAGTTTTCT-
GAACADWATGTTCTT
 A C G T A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T A C G T
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CACAGAGTTTTCT-
AGNACAGNCTGTTCTN
 A C G T A C G T A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CACAGAGTTTTCT-
AGNACANNNTGTNCTN
 A C G T A C G T A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CACAGAGTTTTCT
-ACAAAGGNBCCT
 A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

NR3C2/MA0727.1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CACAGAGTTTTCT-
GGGAACACAATGTTCCC
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T A C G T
C A T G C T A G C A T G C G T A T G C A A T G C C T G A G A T C C G T A C T G A G A C T A T C G G A C T G C A T G A T C A G T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CACAGAGTTTTCT-
GGGTACATAATGTTCCC
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T A C G T
C T A G C T A G C T A G C G A T C G T A A T G C C T G A G A C T C G T A C T G A G A C T A T C G A C G T G C A T G A T C G A T C G T A C

Ar/MA0007.3/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CACAGAGTTTTCT-
NGGTACACNGTGTTCCC
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T A C G T
C T A G C T A G C T A G G C A T C G T A T A G C C T G A A G T C A T G C T C A G A G C T A T C G A C G T C G A T G A T C G A T C G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CACAGAGTTTTCT
CACAGN-------
 A G T C C G T A A G T C C G T A A T C G G T C A T A C G A C G T A C G T A G C T C G A T A G T C A G C T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T