Information for 4-TTTCTCACCAGTCAAG (Motif 5)

A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G
Reverse Opposite:
G A T C G C A T A C G T A C T G C T G A A T G C A G C T C T A G T A C G C G A T C A T G C G T A T C A G T C G A C G T A T G C A
p-value:1e-12
log p-value:-2.865e+01
Information Content per bp:1.666
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets34.9 +/- 17.3bp
Average Position of motif in Background48.0 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0013.1_Eomes_1/Jaspar

Match Rank:1
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TTTCTCACCAGTCAAG
NNTTTTCACACCTTNNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TTTCTCACCAGTCAAG
--ACTAGCCAATCA--
 A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------TTTCTCACCAGTCAAG
TTTTTTTTTTTTTTCAGGTT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G
G A C T G A C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G C G A T C G A T A C G T A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------TTTCTCACCAGTCAAG
TTTTTTTTTTTTTTCAGGTT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T A C G T A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TTTCTCACCAGTCAAG
NTNTTCTTATCAGTNTN-
 A C G T A C G T A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TTTCTCACCAGTCAAG
-----AGCCACTCAAG
 A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G
A C G T A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TTTCTCACCAGTCAAG-
-NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G A C G T
A C G T G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

TBR1/MA0802.1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TTTCTCACCAGTCAAG
TTTCACACCT------
 A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TTTCTCACCAGTCAAG---
--CATAACCACTTAACAAC
 A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G A C G T A C G T A C G T
A C G T A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:TTTCTCACCAGTCAAG------
-------SCAGYCADGCATGAC
 A C G T A C G T A C G T A G T C G A C T G A T C G C T A A T G C A G T C C T G A A T C G A G C T A G T C G T C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C