Information for 17-GTTCAAAACTGAG (Motif 28)

A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C C G T A A C T G A C G T A C G T C G A T A C G T A C T G C G T A C T G A A G T C
p-value:1e-8
log p-value:-1.863e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.4 +/- 9.8bp
Average Position of motif in Background61.8 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTTCAAAACTGAG--
TATCATAATTAAGGA
 A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTTCAAAACTGAG
NATTCAAAT-----
 A C G T A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GTTCAAAACTGAG
CGGTTTCAAA------
 A C G T A C G T A C G T A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTTCAAAACTGAG
GGGGTCAAAGGTCA-
 A C G T A C G T A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTTCAAAACTGAG
GGGGTCAAAGGTCA-
 A C G T A C G T A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

RXRB/MA0855.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTTCAAAACTGAG
GGGGTCAAAGGTCA-
 A C G T A C G T A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T

POL002.1_INR/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GTTCAAAACTGAG
----NNNANTGA-
 A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G
A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GTTCAAAACTGAG
CAAAATCGAAACTAA-
 A C G T A C G T A C G T A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G
T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GTTCAAAACTGAG
ACATCAAAGG----
 A C G T A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GTTCAAAACTGAG--
AACACCAAAACAAAGGA
 A C G T A C G T A C T G G A C T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C T G C G T A A C T G A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A