Information for 11-TGACACTCAGAAGGAC (Motif 19)

A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A G T C A C G T A C G T A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A G T C C G T A
p-value:1e-5
log p-value:-1.289e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.0 +/- 20.3bp
Average Position of motif in Background60.6 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGACACTCAGAAGGAC
SCTGTCAVTCAV------
 A C G T A C G T A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TGACACTCAGAAGGAC-
--CCACACAGCAGGAGA
 A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGACACTCAGAAGGAC
NCTGTCAATCAN------
 A C G T A C G T A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TGACACTCAGAAGGAC
GSCTGTCACTCA-------
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGACACTCAGAAGGAC-
--CCACACAGCAGGAGA
 A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TGACACTCAGAAGGAC
----DCTCAGCAGG--
 A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C
A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGACACTCAGAAGGAC-
--GAGCACAGCAGGACA
 A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C A C G T
A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGACACTCAGAAGGAC
TTGACAG----------
 A C G T A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TGACACTCAGAAGGAC-
-----CACAGCAGGGGG
 A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TGACACTCAGAAGGAC---
----DCHCAGCAGGRGGCC
 A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C