Information for 3-CAATRCTGCC (Motif 8)

A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C
Reverse Opposite:
C T A G A C T G A G T C C G T A A C T G A G C T C G T A A C G T A C G T A C T G
p-value:1e-6
log p-value:-1.531e+01
Information Content per bp:1.905
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif4.58%
Number of Background Sequences with motif78.4
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets44.6 +/- 27.8bp
Average Position of motif in Background45.9 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAATRCTGCC
GACAATGNN---
 A C G T A C G T A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CAATRCTGCC----
-----ATGCCCACC
 A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CAATRCTGCC
CTCACACAATGGCGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAATRCTGCC---
CTAATATTGCTAAA
 A C G T A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAATRCTGCC---
CTAATATTGCTAAA
 A C G T A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------CAATRCTGCC
NNTNANAACAATTNNA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAATRCTGCC
NAACAAT------
 A C G T A C G T A C G T A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAATRCTGCC
GAACAATGG----
 A C G T A C G T A C G T A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAATRCTGCC-
ACAAAGGNBCCT
 A C G T A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C A C G T
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAATRCTGCC
AACAAT------
 A C G T A C G T A G T C C G T A C G T A A C G T C T G A G T A C A C G T A C T G G T A C A G T C
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T