Information for 3-CAGTCTGATCCCAACC (Motif 7)

A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C G T A C T G A C T G A C T G C G T A A C G T A G T C C T G A A C T G C T G A A G T C A C G T C T A G
p-value:1e-7
log p-value:-1.702e+01
Information Content per bp:1.923
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 23.9bp
Average Position of motif in Background28.8 +/- 12.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CAGTCTGATCCCAACC----
----ACTATGCCAACCTACC
 A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.56
Offset:7
Orientation:forward strand
Alignment:CAGTCTGATCCCAACC
-------ATGCCAACC
 A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

RHOXF1/MA0719.1/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CAGTCTGATCCCAACC
----ATAATCCC----
 A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C
A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CAGTCTGATCCCAACC-----
----ANNTNCCCACCCANNAC
 A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CAGTCTGATCCCAACC-
-AGGCTAATCCCCAANG
 A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C A C G T
A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CAGTCTGATCCCAACC
TWGTCTGV--------
 A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CAGTCTGATCCCAACC
--TKCTGTTCCA----
 A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C
A C G T A C G T A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A A C G T A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CAGTCTGATCCCAACC
------GGTCCCGCCC
 A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CAGTCTGATCCCAACC
CTGTCTGG--------
 A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.49
Offset:3
Orientation:forward strand
Alignment:CAGTCTGATCCCAACC
---CTTAATCCC----
 A G T C C G T A A C T G A G C T A G T C A G C T C T A G G T C A C G A T A G T C A G T C A G T C C G T A G T C A A G T C A G T C
A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T