Information for 4-GTGCACACACAGG (Motif 10)

T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G
Reverse Opposite:
G T A C T G A C G C A T C T A G A G C T C T A G A G C T C T A G G A C T C T A G G T A C G C T A A T G C
p-value:1e-5
log p-value:-1.307e+01
Information Content per bp:1.541
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif13.74%
Number of Background Sequences with motif1553.5
Percentage of Background Sequences with motif3.74%
Average Position of motif in Targets47.4 +/- 22.1bp
Average Position of motif in Background48.2 +/- 46.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----GTGCACACACAGG
TACATGTGCACATAAAA-
 A C G T A C G T A C G T A C G T A C G T T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GTGCACACACAGG
CAGATGTGCACATACGT-
 A C G T A C G T A C G T A C G T A C G T T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------GTGCACACACAGG
NNNVCTGWGYAAACASN--
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTGCACACACAGG-
YATGCATATRCATRT
 A C G T T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTGCACACACAGG
ATTTGCATACAATGG
 A C G T A C G T T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTGCACACACAGG-
AGCGGCACACACGCAA
 A C G T A C G T T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTGCACACACAGG--
ATGAATATTCATGAG
 T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTGCACACACAGG
ATGMATATDC---
 T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GTGCACACACAGG
AAAGTAAACAAAAATT
 A C G T A C G T A C G T T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GTGCACACACAGG
-------CACAGN
 T A C G C G A T C A T G G A T C C T G A G A T C T C G A G A T C T C G A G A T C C G T A A C T G C A T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C