Information for 6-TGGCCDAGTA (Motif 9)

A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A
Reverse Opposite:
C G A T C G T A G T A C G A C T G A T C C A T G A C T G A G T C T G A C C T G A
p-value:1e-13
log p-value:-3.040e+01
Information Content per bp:1.484
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif5.07%
Number of Background Sequences with motif598.9
Percentage of Background Sequences with motif1.30%
Average Position of motif in Targets51.5 +/- 26.2bp
Average Position of motif in Background49.5 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGGCCDAGTA
TGACCTARTT
 A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGGCCDAGTA
TTGGCA-----
 A C G T A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGCCDAGTA
AGGCCTAG--
 A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGGCCDAGTA
NTTGGCANN---
 A C G T A C G T A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCDAGTA---
TTGACCTANTTATN
 A C G T A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGCCDAGTA
TGACCTTGAT
 A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGGCCDAGTA
TGATTGGCTANN--
 A C G T A C G T A C G T A C G T A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGCCDAGTA---
GCTGACCTTGAACTN
 A C G T A C G T A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A A C G T A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Nfe2l2/MA0150.2/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TGGCCDAGTA
CAGCATGACTCAGCA
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A
G T A C C T G A T A C G T G A C T C G A A C G T A C T G C G T A A T G C G C A T G A T C C T G A T A C G A T G C C G T A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGCCDAGTA
BNTGDCCTTG--
 A C G T A C G T A G C T A C T G T C A G T G A C G T A C C T A G C G T A C A T G G C A T G C T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T