Information for 3-GCCATTGTAG (Motif 5)

T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G
Reverse Opposite:
A G T C G C A T C G T A A G T C G T C A G T C A G A C T T A C G A T C G A G T C
p-value:1e-17
log p-value:-3.993e+01
Information Content per bp:1.682
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.77%
Number of Background Sequences with motif589.3
Percentage of Background Sequences with motif1.28%
Average Position of motif in Targets43.5 +/- 29.0bp
Average Position of motif in Background51.9 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCCATTGTAG-
-CCATTGTTYB
 T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GCCATTGTAG
--CTTTGT--
 T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G
A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCCATTGTAG
-CCTTTGTT-
 T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCCATTGTAG-
-CCATTGTTNY
 T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G A C G T
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCCATTGTAG
-CCWTTGTY-
 T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCCATTGTAG
-CCATTGTTC
 T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCCATTGTAG-
-CCWTTGTYYB
 T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCCATTGTAG
NCCATTGTTY
 T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCCATTGTAG
NCCATTGTTC
 T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCCATTGTAG---
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T T C A G T A G C A T G C C T G A C A G T C A G T C T A G C G A T C G T A T C A G A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T