Information for 11-CCCAGCAGCA (Motif 12)

G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C G T A C T G A G T C A C G T A C T G A C T G A C T G
p-value:1e-10
log p-value:-2.353e+01
Information Content per bp:1.967
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets42.0 +/- 24.8bp
Average Position of motif in Background65.4 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCCAGCAGCA--
CACAGCAGGGGG
 G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAGCA--
CCACACAGCAGGAGA
 A C G T A C G T A C G T G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAGCA--
CCACACAGCAGGAGA
 A C G T A C G T A C G T G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCAGCA----
DCHCAGCAGGRGGCC
 A C G T G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAGCA--
GAGCACAGCAGGACA
 A C G T A C G T A C G T G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCCAGCAGCA
--CAGCTGNT
 G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A
A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCCAGCAGCA
TGTTKCCTAGCAACM
 A C G T A C G T A C G T A C G T A C G T G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCCAGCAGCA-
-NCAGCTGCTG
 G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T
A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCAGCA
DCTCAGCAGG-
 A C G T G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAGCA---
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T G T A C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A