Information for 1-VHCVTGACCT (Motif 1)

T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T
Reverse Opposite:
C T G A A C T G A C T G C A G T A G T C C T G A A G T C T A C G C A T G A G T C
p-value:1e-180
log p-value:-4.155e+02
Information Content per bp:1.669
Number of Target Sequences with motif523.0
Percentage of Target Sequences with motif63.86%
Number of Background Sequences with motif1429.4
Percentage of Background Sequences with motif18.31%
Average Position of motif in Targets49.4 +/- 25.0bp
Average Position of motif in Background51.4 +/- 41.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.59
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.96
Offset:4
Orientation:reverse strand
Alignment:VHCVTGACCT
----TGACCT
 T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.94
Offset:4
Orientation:reverse strand
Alignment:VHCVTGACCT--
----TGACCTYA
 T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.92
Offset:4
Orientation:reverse strand
Alignment:VHCVTGACCT--
----TGACCYCT
 T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.91
Offset:4
Orientation:reverse strand
Alignment:VHCVTGACCT----
----TGACCTTGAT
 T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.91
Offset:3
Orientation:reverse strand
Alignment:VHCVTGACCT-
---GTGACCTT
 T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T A C G T
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:VHCVTGACCT---
CNNTTGACCTTTG
 T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T A C G T A C G T A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.88
Offset:3
Orientation:forward strand
Alignment:VHCVTGACCT---
---NTGACCTTGA
 T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:VHCVTGACCT------
NNNNTGACCTTTNNNN
 T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:VHCVTGACCT------
NNNGTGACCTTTGNNN
 T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.85
Offset:3
Orientation:reverse strand
Alignment:VHCVTGACCT---
---ATGACCTTGA
 T C A G G T A C A T G C T C A G A G C T C T A G G T C A G T A C G T A C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A