Information for 3-TGACCCBACAGTGCTC (Motif 5)

A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C
Reverse Opposite:
T A C G G T C A C A T G A T G C C G T A G T A C C G A T A C T G G C A T T A G C C A T G A C T G A C T G A C G T A G T C G T C A
p-value:1e-16
log p-value:-3.713e+01
Information Content per bp:1.712
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets44.0 +/- 30.8bp
Average Position of motif in Background56.2 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGACCCBACAGTGCTC
NNCNTGACCCCGCTCT----
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TGACCCBACAGTGCTC-----
----CGAACAGTGCTCACTAT
 A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGACCCBACAGTGCTC
TGACCT----------
 A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TGACCCBACAGTGCTC
TGTCGTGACCCCTTAAT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGACCCBACAGTGCTC
NNNNTGACCCGGCGCG----
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGACCCBACAGTGCTC
TGACCYCT--------
 A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGACCCBACAGTGCTC
TGACCTYA--------
 A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGACCCBACAGTGCTC
NNANTTGACCCCTNNNN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G A C G T A C G T A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGACCCBACAGTGCTC
GCGACCACACTG-----
 A C G T A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T A C G T A C G T A C G T A C G T

PB0025.1_Glis2_1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TGACCCBACAGTGCTC
TATCGACCCCCCACAG---
 A C G T A C G T A C G T A C G T A C T G C G T A G T A C G T A C G T A C A T C G C G T A A G T C C G T A A C T G G A C T A T C G G A T C A C G T A T G C
G A C T G C T A G C A T T A G C A C T G T G C A A G T C A G T C G A T C G A T C G A T C G A T C T G C A A G T C C T G A C A T G A C G T A C G T A C G T