Information for 3-GGTCAGGWCA (Motif 3)

C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A
Reverse Opposite:
A G C T C T A G G C A T A G T C G T A C A G C T A T C G T G C A A T G C G T A C
p-value:1e-42
log p-value:-9.785e+01
Information Content per bp:1.680
Number of Target Sequences with motif169.0
Percentage of Target Sequences with motif19.47%
Number of Background Sequences with motif1232.2
Percentage of Background Sequences with motif5.81%
Average Position of motif in Targets53.0 +/- 26.6bp
Average Position of motif in Background48.9 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GGTCAGGWCA
--TRAGGTCA
 C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GGTCAGGWCA
----AGGTCA
 C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGGWCA
AGRGGTCA-----
 A C G T A C G T A C G T C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGTCAGGWCA-
---AAGGTCAC
 C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGTCAGGWCA-
-NACAGGAAAT
 C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A A C G T
A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------GGTCAGGWCA
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------GGTCAGGWCA
AGAGCGGGGTCAAGTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGTCAGGWCA
ATCAAGGTCA-----
 A C G T A C G T A C G T A C G T A C G T C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGTCAGGWCA
-GTCATN---
 C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A
A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T

XBP1/MA0844.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGTCAGGWCA--
AATGCCACGTCATC
 A C G T A C G T C A T G A T C G A C G T T A G C C T G A A C T G A C T G C G T A G A T C T C G A A C G T A C G T
C G T A C T G A A C G T C A T G G T A C A G T C C T G A G A T C C T A G A G C T T G A C C T G A A C G T A G T C