Information for 12-CAGAGGGCAG (Motif 11)

G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
Reverse Opposite:
G T A C G C A T A C T G A G T C G T A C G T A C A G C T G T A C G C A T A C T G
p-value:1e-11
log p-value:-2.711e+01
Information Content per bp:1.823
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.57%
Number of Background Sequences with motif156.1
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets48.9 +/- 21.3bp
Average Position of motif in Background51.7 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCAG
CAAAGGTCAG
 G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAGAGGGCAG
-TNNGGGCAG
 G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGGGCAG
TAGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAGAGGGCAG
-TRAGGTCA-
 G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CAGAGGGCAG
TCACCTCTGGGCAG
 A C G T A C G T A C G T A C G T G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CAGAGGGCAG
GTAGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGGCAG
TGGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:8
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CAGAGGGCAG
AGGGGTCAGAGGTCA-
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAGAGGGCAG
-AGRGGTCA-
 G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CAGAGGGCAG
CCGCCCAAGGGCAG
 A C G T A C G T A C G T A C G T G T A C C G T A C A T G C T G A A C T G A C T G C T A G A G T C C G T A A C T G
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G