Information for 1-GGTCACBCWG (Motif 1)

C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G
Reverse Opposite:
T A G C C G A T T A C G T C A G T A C G G A C T T A C G G T C A A G T C G A T C
p-value:1e-56
log p-value:-1.294e+02
Information Content per bp:1.592
Number of Target Sequences with motif314.0
Percentage of Target Sequences with motif36.18%
Number of Background Sequences with motif3057.9
Percentage of Background Sequences with motif14.43%
Average Position of motif in Targets49.2 +/- 26.0bp
Average Position of motif in Background50.1 +/- 36.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ESR2/MA0258.2/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GGTCACBCWG----
AGGTCACCCTGACCT
 A C G T C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G A C G T A C G T A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GGTCACBCWG
AGTCACGC--
 C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GGTCACBCWG
AGGTCA-----
 A C G T C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GGTCACBCWG
AGRGGTCA-----
 A C G T A C G T A C G T C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.74
Offset:-7
Orientation:forward strand
Alignment:-------GGTCACBCWG
CGCGCCGGGTCACGTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GGTCACBCWG
ATCAAGGTCA-----
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GGTCACBCWG
TRAGGTCA-----
 A C G T A C G T A C G T C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GGTCACBCWG
-GTCATN---
 C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G
A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGTCACBCWG
AAGGTCAC----
 A C G T A C G T C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GGTCACBCWG-----
-GTCACGCTCNCTGA
 C T A G A C T G C A G T A T G C C T G A A T G C A G T C A T G C G C T A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A