Information for 6-CTRCAGCGCCCTCTGG (Motif 3)

A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G
Reverse Opposite:
A G T C A G T C C G T A A T C G C G T A A C T G A T C G C T A G A T G C T A C G G T A C A C G T A C T G A G T C G T C A A C T G
p-value:1e-12
log p-value:-2.993e+01
Information Content per bp:1.807
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.7 +/- 22.1bp
Average Position of motif in Background74.3 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTRCAGCGCCCTCTGG----
CNNBRGCGCCCCCTGSTGGC
 A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTRCAGCGCCCTCTGG------
--ANAGTGCCACCTGGTGGCCA
 A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

GFY(?)/Promoter/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTRCAGCGCCCTCTGG
ACTACAATTCCC-----
 A C G T A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTRCAGCGCCCTCTGG------
---TAGCGCCCCCTGGTGGCCA
 A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CTRCAGCGCCCTCTGG
NNNANTGCAGTGCNNTT---
 A C G T A C G T A C G T A C G T A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--CTRCAGCGCCCTCTGG
GGCTCYAKCAYC------
 A C G T A C G T A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.48
Offset:5
Orientation:forward strand
Alignment:CTRCAGCGCCCTCTGG-
-----ATGCCCTGAGGC
 A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C

HINFP/MA0131.2/Jaspar

Match Rank:8
Score:0.48
Offset:3
Orientation:forward strand
Alignment:CTRCAGCGCCCTCTGG
---CAACGTCCGCGG-
 A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G
A C G T A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.48
Offset:9
Orientation:forward strand
Alignment:CTRCAGCGCCCTCTGG---
---------GGTCTGGCAT
 A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.47
Offset:6
Orientation:forward strand
Alignment:CTRCAGCGCCCTCTGG
------VBSYGTCTGG
 A G T C A C G T T C A G A G T C C G T A A C T G A G T C A T C G A G T C A T G C A G T C A C G T A T G C A C G T C T A G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G