Information for 9-AATTTTAAAA (Motif 12)

T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A
Reverse Opposite:
C G A T G A C T A C G T A G C T C T G A G T C A G T C A C T G A G C A T A C G T
p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.648
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif7.55%
Number of Background Sequences with motif1546.6
Percentage of Background Sequences with motif3.26%
Average Position of motif in Targets53.1 +/- 29.7bp
Average Position of motif in Background50.7 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AATTTTAAAA
CGGTTTCAAA-
 A C G T T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AATTTTAAAA
-NATTCAAAT
 T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATTTTAAAA--
CTAATATTGCTAAA
 A C G T A C G T T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATTTTAAAA--
CTAATATTGCTAAA
 A C G T A C G T T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0148.1_Mtf1_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AATTTTAAAA---
AAATAAGAAAAAAC
 A C G T T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A A C G T A C G T A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AATTTTAAAA-----
NAATTTTACGAGNTNN
 A C G T T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A A C G T A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXD11/MA0908.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AATTTTAAAA-
-GTCGTAAAAA
 T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A A C G T
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PB0145.1_Mafb_2/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AATTTTAAAA----
CAATTGCAAAAATAT
 A C G T T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A A C G T A C G T A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

PB0079.1_Sry_1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AATTTTAAAA---
TATAATTATAATATTC
 A C G T A C G T A C G T T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A A C G T A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AATTTTAAAA-
AGTCGTAAAAA
 T G C A C G T A G A C T C A G T C A G T G A C T T C G A T C G A C T G A G C T A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A