Information for 24-AGTTACAGTAAGG (Motif 40)

C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G
Reverse Opposite:
G T A C G A T C C A G T A G C T C G T A G A T C C G A T C T A G A C G T C T G A G T C A A G T C A C G T
p-value:1e-5
log p-value:-1.367e+01
Information Content per bp:1.679
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif110.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets51.6 +/- 27.0bp
Average Position of motif in Background49.6 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1/MA0508.1/Jaspar

Match Rank:1
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGTTACAGTAAGG
AGAAAGTGAAAGTGA--
 A C G T A C G T A C G T A C G T C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGTTACAGTAAGG
GAAAGTGAAAGT----
 A C G T A C G T A C G T C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGTTACAGTAAGG
---AACAGGAAGT
 C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G
A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGTTACAGTAAGG-
----ACAGGAAGTG
 C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G A C G T
A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGTTACAGTAAGG
NTGATTGACAGN----
 A C G T A C G T A C G T C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AGTTACAGTAAGG
ACTAGTTAAC------
 A C G T A C G T A C G T C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AGTTACAGTAAGG
TGAGTGACAGSC---
 A C G T A C G T C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AGTTACAGTAAGG-----
GAAGTANCACGAATNMRAGT
 A C G T A C G T C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGTTACAGTAAGG
NNCTTCCNGGAAGN
 A C G T C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G
A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AGTTACAGTAAGG
---NACAGGAAAT
 C G T A C T A G C A G T G A C T T G C A A G T C C G T A C A T G C G A T C T G A G T C A C T A G C A T G
A C G T A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T