Information for 3-GTATTGCCCTCTA (Motif 4)

T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A
Reverse Opposite:
A C G T C T G A A T C G C T G A A C T G A C T G A C T G T G A C C G T A T C G A A G C T G T C A A G T C
p-value:1e-12
log p-value:-2.777e+01
Information Content per bp:1.716
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif13.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.1 +/- 21.9bp
Average Position of motif in Background61.8 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GTATTGCCCTCTA
----TGACCYCT-
 T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A
A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTATTGCCCTCTA---
NNNNTTGACCCCTNNNN
 A C G T T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A A C G T A C G T A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GTATTGCCCTCTA
----TGACCTYA-
 T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTATTGCCCTCTA---
NNANTTGACCCCTNNNN
 A C G T T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A A C G T A C G T A C G T
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTATTGCCCTCTA
---CTGACCTTTG
 T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A
A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTATTGCCCTCTA-------
ANAGTGCCACCTGGTGGCCA
 T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTATTGCCCTCTA
WCATTTTGKCCTCYT
 A C G T A C G T T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A
C G T A G A T C C T G A A C G T A C G T A C G T C A G T C T A G A C G T G T A C G T A C G A C T A G T C G A T C A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GTATTGCCCTCTA-
----TGACCTTGAT
 T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTATTGCCCTCTA---
TGTCGTGACCCCTTAAT
 A C G T T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GTATTGCCCTCTA
----TGACCT---
 T C A G A C G T C T G A A G C T C G A T A C T G T G A C T G A C G T A C G A C T A T G C A G C T T G C A
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T