Information for 12-TCAGBCTAAVAAA (Motif 20)

A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A
Reverse Opposite:
C G A T A C G T A C G T A C G T A C G T A C G T C G T A A C T G T A C G G T A C A C G T A C T G G T C A
p-value:1e-9
log p-value:-2.223e+01
Information Content per bp:1.850
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.2 +/- 24.2bp
Average Position of motif in Background50.1 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCAGBCTAAVAAA
BCAGACWA-----
 A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PB0186.1_Tcf3_2/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCAGBCTAAVAAA----
--AGCCGAAAAAAAAAT
 A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TCAGBCTAAVAAA
-------AACAAT
 A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TCAGBCTAAVAAA-
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0121.1_Foxj3_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCAGBCTAAVAAA---
AACACCAAAACAAAGGA
 A C G T A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TCAGBCTAAVAAA------
--AGAAGAACAAAGGACTA
 A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TCAGBCTAAVAAA
------NAACAAT
 A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCAGBCTAAVAAA--
-TACTGGAAAAAAAA
 A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A A C G T A C G T
A C G T G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TCAGBCTAAVAAA-----
--AACCCAATAAAATTCG
 A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

SRY/MA0084.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TCAGBCTAAVAAA
----GTAAACAAT
 A C G T A G T C C G T A A C T G A G T C A G T C C G A T C G T A C G T A T C G A C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T