Information for 18-TGGCAATGGA (Motif 21)

A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A G T C C G T A
p-value:1e-5
log p-value:-1.270e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.2 +/- 22.1bp
Average Position of motif in Background62.3 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAATGGA
CTTGGCAA----
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAATGGA
NTTGGCANN---
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAATGGA
NNTTGGCANN---
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGCAATGGA
TTGGCA-----
 A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGGCAATGGA
-GACAATGNN
 A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGGCAATGGA
-AACAAAGG-
 A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGGCAATGGA
-RACAAWGG-
 A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGGCAATGGA
VRAACAATGG-
 A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAATGGA
GGTTGGCAT----
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAATGGA----
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A