Information for 10-CCAAGGCAAA (Motif 11)

A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A
Reverse Opposite:
G C A T A C G T C A G T T C A G A G T C G A T C G C A T C G A T C A T G T A C G
p-value:1e-12
log p-value:-2.863e+01
Information Content per bp:1.660
Number of Target Sequences with motif94.0
Percentage of Target Sequences with motif10.71%
Number of Background Sequences with motif2196.9
Percentage of Background Sequences with motif4.73%
Average Position of motif in Targets48.6 +/- 26.9bp
Average Position of motif in Background50.4 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CCAAGGCAAA-
-CAAGGHCANV
 A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A A C G T
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CCAAGGCAAA----
TGCCAAAATAAACANN
 A C G T A C G T A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCAAGGCAAA
NTCAAGGTCA-
 A C G T A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCAAGGCAAA
BTCAAGGTCA-
 A C G T A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCAAGGCAAA
NGTTGCCATGGCAA-
 A C G T A C G T A C G T A C G T A C G T A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCAAGGCAAA
GGTTGCCATGGCAA-
 A C G T A C G T A C G T A C G T A C G T A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CCAAGGCAAA---
--AAGGCAAGTGT
 A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCAAGGCAAA
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCAAGGCAAA-
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A C G T A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CCAAGGCAAA
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A C G T A T G C G T A C G C T A C G T A C T A G C T A G A G T C G T C A T G C A C G T A
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C