Information for 1-RTGACCTTKY (Motif 1)

C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C
Reverse Opposite:
C T A G G T C A T G C A G T C A A C T G C T A G C G A T A T G C C G T A G A C T
p-value:1e-44
log p-value:-1.024e+02
Information Content per bp:1.629
Number of Target Sequences with motif171.0
Percentage of Target Sequences with motif19.48%
Number of Background Sequences with motif2631.4
Percentage of Background Sequences with motif5.67%
Average Position of motif in Targets52.6 +/- 26.5bp
Average Position of motif in Background50.1 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:RTGACCTTKY
GTGACCTT--
 C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---RTGACCTTKY---
NNNNTGACCTTTNNNN
 A C G T A C G T A C G T C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C A C G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:3
Score:0.91
Offset:1
Orientation:forward strand
Alignment:RTGACCTTKY---
-TGACCTTTNCNT
 C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C A C G T A C G T A C G T
A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.91
Offset:0
Orientation:forward strand
Alignment:RTGACCTTKY
NTGACCTTGA
 C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---RTGACCTTKY---
NNNGTGACCTTTGNNN
 A C G T A C G T A C G T C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:RTGACCTTKY
-TGACCTYA-
 C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:RTGACCTTKY
ATGACCTTGA
 C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:RTGACCTTKY-
-TGACCTTGAT
 C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.88
Offset:-4
Orientation:reverse strand
Alignment:----RTGACCTTKY---
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C A C G T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:RTGACCTTKY
-TGACCT---
 C T G A A C G T T A C G C G T A G A T C G T A C C A G T A C G T C A G T G A T C
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T