Information for 12-AGGCCATTAATAASTC (Motif 10)

C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C
Reverse Opposite:
C A T G C G T A A T C G C G A T A G C T G T C A C G A T C G A T C G T A G C T A A C G T A C T G A C T G T A G C A T G C A G C T
p-value:1e-12
log p-value:-2.870e+01
Information Content per bp:1.690
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.7 +/- 23.0bp
Average Position of motif in Background36.9 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AGGCCATTAATAASTC
-RGCCATYAATCA---
 C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C
A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGGCCATTAATAASTC
GGAGGTCATTAATTAT--
 A C G T A C G T C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGGCCATTAATAASTC
-GGCCATAAATCA---
 C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T

Hoxd8/MA0910.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGGCCATTAATAASTC-
NAGCCATTAATTANTTA
 C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C A C G T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PH0080.1_Hoxd8/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGGCCATTAATAASTC-
NAGCCATTAATTANTTA
 C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C A C G T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGGCCATTAATAASTC
-GGCCATAAATCA---
 C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T

PH0055.1_Hoxa7_2/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGGCCATTAATAASTC-
-TNCCATTAATTACTNC
 C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C A C G T
A C G T A C G T C A G T A T G C A G T C T G C A A C G T G C A T G T C A C G T A A C G T C A G T C G T A T G A C A C G T T G C A T G A C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AGGCCATTAATAASTC
---TCATCAATCA---
 C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C
A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGGCCATTAATAASTC
GANGTAATTAATTANN-
 A C G T C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGGCCATTAATAASTC
--GCCATAAATCA---
 C T G A A T C G A C T G G T A C A G T C C G T A C A G T C G A T C G T A C G T A A C G T C T G A G C T A A T G C G A C T G A T C
A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T