Information for 12-ACAGRCAGAMKTMKGM (Motif 15)

C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A
Reverse Opposite:
A C G T A G T C G T C A A C T G T C G A G T C A A C T G A C G T A G T C A C G T A C T G A G C T A G T C A C G T A C T G A C G T
p-value:1e-11
log p-value:-2.572e+01
Information Content per bp:1.847
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.6 +/- 15.1bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ACAGRCAGAMKTMKGM
CCAGACAG--------
 C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ACAGRCAGAMKTMKGM
CCAGACRSVB------
 C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-ACAGRCAGAMKTMKGM
CACAGN-----------
 A C G T C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACAGRCAGAMKTMKGM
BCAGACWA--------
 C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----ACAGRCAGAMKTMKGM
CAAATCCAGACATCACA----
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-ACAGRCAGAMKTMKGM
AACAGGAAGT-------
 A C G T C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----ACAGRCAGAMKTMKGM
AGGTGNCAGACAG--------
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:8
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----ACAGRCAGAMKTMKGM
AGCAACAGCCGCACC-----
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:ACAGRCAGAMKTMKGM
-ATGCCAGACN-----
 C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-ACAGRCAGAMKTMKGM---
SMCAGTCWGAKGGAGGAGGC
 A C G T C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C G T A G T A C A C G T A C G T G T A C A C G T A C T G G T C A A C G T A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C