Information for 6-GCCTAGCTAAAGG (Motif 9)

A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G
Reverse Opposite:
A G T C A G T C A G C T A G C T A G C T C G T A A C T G A G T C A C G T C G T A A C T G A C T G A G T C
p-value:1e-12
log p-value:-2.805e+01
Information Content per bp:1.927
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets72.2 +/- 10.9bp
Average Position of motif in Background79.4 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCTAAAGG
AGGCCTAG-------
 A C G T A C G T A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCCTAGCTAAAGG--
ANNNCTAGTTAACNGNN
 A C G T A C G T A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCTAGCTAAAGG
-ACTAGTTAAC--
 A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GCCTAGCTAAAGG---
----AGGTCAAGGTCA
 A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

GATA3/MA0037.2/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCCTAGCTAAAGG
----AGATAAGA-
 A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G
A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCCTAGCTAAAGG--
-----GCTAAACGGT
 A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCCTAGCTAAAGG
SCCTAGCAACAG-
 A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GCCTAGCTAAAGG-
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GCCTAGCTAAAGG---
----AGGTCAAGGTCA
 A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCCTAGCTAAAGG---
AAACAGACAAAGGAAT
 A C T G A G T C A G T C C G A T C G T A A C T G G T A C A C G T C T G A C T G A C T G A C T A G C T A G A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T