Information for 9-RGGCAGAACAGAC (Motif 15)

C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C
Reverse Opposite:
A C T G C A G T A G T C C G A T A C T G A C G T C G A T A G T C C G A T A C T G A G T C A G T C A G T C
p-value:1e-11
log p-value:-2.566e+01
Information Content per bp:1.840
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.5 +/- 16.4bp
Average Position of motif in Background46.3 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---RGGCAGAACAGAC
TNNGGGCAG-------
 A C G T A C G T A C G T C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:RGGCAGAACAGAC----
-------CCAGACRSVB
 C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------RGGCAGAACAGAC
NNNNTTGGGCACNNCN---
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:forward strand
Alignment:RGGCAGAACAGAC-----
---AGCAACAGCCGCACC
 C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:RGGCAGAACAGAC--
-------CCAGACAG
 C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:RGGCAGAACAGAC--
-------BCAGACWA
 C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---RGGCAGAACAGAC----
NNNGGGHAGCAHRTGCTRCC
 A C G T A C G T A C G T C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C A C G T A C G T A C G T A C G T
A T G C A G T C G C A T C T A G A C T G C T A G G A C T C G T A C T A G A G T C T G C A G C A T C T G A A C G T T C A G A G T C A C G T C T A G A G T C A G T C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---RGGCAGAACAGAC
RGKGGGCGGAGC----
 A C G T A C G T A C G T C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---RGGCAGAACAGAC
AGGGGGCGGGGCTG--
 A C G T A C G T A C G T C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:RGGCAGAACAGAC-----
---VAGRACAKNCTGTBC
 C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G G T C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C