Information for 22-TCTGGCCGCCTGV (Motif 28)

A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G
Reverse Opposite:
A T C G A T G C C G T A C T A G C T A G A G T C C A T G A C T G G T A C A G T C C G T A A C T G C G T A
p-value:1e-7
log p-value:-1.832e+01
Information Content per bp:1.812
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif26.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets42.2 +/- 17.6bp
Average Position of motif in Background52.0 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCTGGCCGCCTGV--
-CTGGCAGNCTGCCA
 A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G A C G T A C G T
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCTGGCCGCCTGV
GGTCTGGCAT-----
 A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TCTGGCCGCCTGV
-----CTGTCTGG
 A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TCTGGCCGCCTGV
---VBSYGTCTGG
 A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCTGGCCGCCTGV
TGTCTGDCACCT---
 A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TCTGGCCGCCTGV
CTGTCTGTCACCT---
 A C G T A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TCTGGCCGCCTGV----
-TTGGCANNNTGCCAAG
 A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G A C G T A C G T A C G T A C G T
A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TCTGGCCGCCTGV
-----TWGTCTGV
 A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------TCTGGCCGCCTGV
NNTNNTGTCTGGNNTNG---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TCTGGCCGCCTGV
-TTGGCA------
 A C G T A G T C A C G T C T A G A C T G A G T C G T A C A C T G A G T C A G T C A C G T A T C G T A C G
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T