Information for 19-GCTAATCCAGCTTGAG (Motif 26)

A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
Reverse Opposite:
A G T C C G A T A G T C C G T A C G T A A C T G G T A C A C G T C T A G C T A G C G T A A G C T C G A T C G T A A C T G A G T C
p-value:1e-8
log p-value:-1.989e+01
Information Content per bp:1.914
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 23.7bp
Average Position of motif in Background43.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCTAATCCAGCTTGAG
GCTAATCC--------
 A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCCAGCTTGAG
GNNAGCTAATCCCCCN----
 A C G T A C G T A C G T A C G T A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCTAATCCAGCTTGAG
NYTAATCCYB------
 A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCTAATCCAGCTTGAG
GCTAATCCCC------
 A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCTAATCCAGCTTGAG
NNTAATCCNGNCNN--
 A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCTAATCCAGCTTGAG
CTTAATCCC-------
 A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCTAATCCAGCTTGAG
-TTAATCCC-------
 A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCTAATCCAGCTTGAG
-YTAATCCY-------
 A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCTAATCCAGCTTGAG
AGGCTAATCCCCAANG--
 A C G T A C G T A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCTAATCCAGCTTGAG
--TAATCCCN------
 A C T G A G T C C G A T C G T A C T G A A C G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C T G
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T