Information for 18-AGTTAATCTCCAT (Motif 23)

C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T
Reverse Opposite:
C T G A C G A T A C T G A T C G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A T G C A C G T
p-value:1e-8
log p-value:-1.989e+01
Information Content per bp:1.842
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.8 +/- 26.9bp
Average Position of motif in Background37.2 +/- 10.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0121.1_Obox1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATCTCCAT--
NTAGTTAATCCCCTTAN
 A C G T A C G T C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T A C G T A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PH0122.1_Obox2/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATCTCCAT--
ATAGTTAATCCCCCTCA
 A C G T A C G T C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATCTCCAT--
ATAGTTAATCCCCCNNA
 A C G T A C G T C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0124.1_Obox5_1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AGTTAATCTCCAT-
NANANTTAATCCCNNNN
 A C G T A C G T A C G T C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGTTAATCTCCAT-
GATAATTAATCCCTCTT
 A C G T A C G T A C G T C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

PH0015.1_Crx/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGTTAATCTCCAT--
AGGCTAATCCCCAANG
 A C G T C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGTTAATCTCCAT-
NNNAATTAATCCCCNCN
 A C G T A C G T A C G T C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATCTCCAT--
NTTGTTAATCCCTCTNN
 A C G T A C G T C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGTTAATCTCCAT
--CTAATCCTCTT
 C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T
A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGTTAATCTCCAT
--AAGATATCCTT
 C G T A A T C G A C G T C G A T C G T A C G T A A C G T G T A C C G A T A T G C A G T C C G T A A G C T
A C G T A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T