Information for 14-CCCGCAGACAGGC (Motif 18)

A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C
Reverse Opposite:
A T C G A G T C G T A C A G C T A T C G A C G T A G T C A C G T A C T G G A T C C T A G A C T G T A C G
p-value:1e-9
log p-value:-2.214e+01
Information Content per bp:1.756
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif187.9
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets50.0 +/- 26.8bp
Average Position of motif in Background51.8 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CCCGCAGACAGGC
---CCAGACRSVB
 A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CCCGCAGACAGGC
---CCAGACAG--
 A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCCGCAGACAGGC-----
---SCAGYCADGCATGAC
 A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCCGCAGACAGGC
---BCAGACWA--
 A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCCGCAGACAGGC
TGCCCCCGGGCA---
 A C G T A C G T A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCCGCAGACAGGC
CGCCCCCTGACA---
 A C G T A C G T A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCCGCAGACAGGC
TGCCCCAGGGCA---
 A C G T A C G T A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C
G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A A C G T A C G T A C G T

TFAP2C/MA0524.2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCCGCAGACAGGC
TGCCCCAGGGCA---
 A C G T A C G T A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C
G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCCGCAGACAGGC
AGCCTCAGGCA---
 A C G T A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCCGCAGACAGGC---
-TCCCAGMCRAGCCCC
 A T G C A G T C G A T C C T A G G T A C C G T A A C T G T G C A A T G C C T G A A C T G C T A G A T G C A C G T A C G T A C G T
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C