Information for 13-RTGGGTTTTAGTAAAA (Motif 11)

C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A
Reverse Opposite:
A C G T C A G T G A C T C G A T C G T A A G T C G C A T C T G A T G C A C G T A C G T A T A G C G A T C A G T C G T C A A G T C
p-value:1e-11
log p-value:-2.568e+01
Information Content per bp:1.725
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 12.7bp
Average Position of motif in Background53.1 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0129.1_Glis2_2/Jaspar

Match Rank:1
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:RTGGGTTTTAGTAAAA--
----TCTTTANTAATANN
 C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

PB0116.1_Elf3_2/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:RTGGGTTTTAGTAAAA-----
----GTTCAAAAAAAAAATTC
 C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

PB0001.1_Arid3a_1/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:RTGGGTTTTAGTAAAA----
---GGGTTTAATTAAAATTC
 C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:RTGGGTTTTAGTAAAA-----
----AATGCAATAAAATTTAT
 C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:RTGGGTTTTAGTAAAA----
----CTACCAATAAAATTCT
 C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PB0098.1_Zfp410_1/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----RTGGGTTTTAGTAAAA
TATTATGGGATGGATAA---
 A C G T A C G T A C G T A C G T C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:RTGGGTTTTAGTAAAA
------NCYAATAAAA
 C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

PB0182.1_Srf_2/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:RTGGGTTTTAGTAAAA-----
----GTTAAAAAAAAAAATTA
 C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:forward strand
Alignment:RTGGGTTTTAGTAAAA-
------GGTAATAAAAA
 C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PB0181.1_Spdef_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---RTGGGTTTTAGTAAAA
CTACTAGGATGTNNTN---
 A C G T A C G T A C G T C T A G A C G T C T A G C T A G A T C G C G A T A C G T A C G T A G C T C G T A T C A G G C A T C G T A C T G A G T C A C G T A
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C A C G T A C G T A C G T