Information for 2-TGYTGAKCTSWGS (Motif 7)

A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C
Reverse Opposite:
A T C G A G T C C G T A A T C G C G T A C A T G G T A C A C G T A G T C C G T A C T A G A G T C C G T A
p-value:1e-8
log p-value:-2.065e+01
Information Content per bp:1.836
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.49%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.2 +/- 31.0bp
Average Position of motif in Background29.4 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NRL/MA0842.1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TGYTGAKCTSWGS
AATTTGCTGAC------
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGYTGAKCTSWGS
--CTGACCTTTG-
 A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGYTGAKCTSWGS
AAAWWTGCTGACWWD---
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C
C T G A C G T A C G T A G C T A G C A T G C A T T C A G G T A C G C A T C A T G C G T A A T G C G C A T G C A T C A T G A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGYTGAKCTSWGS
AAANTGCTGACTNAG--
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C
C G T A C G T A C G T A G C A T C G A T A T C G G T A C A C G T A C T G C T G A A T G C G C A T G A T C C G T A C A T G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGYTGAKCTSWGS
---TGACCTYA--
 A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGYTGAKCTSWGS
CNNTTGACCTTTG-
 A C G T A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T

Mafb/MA0117.2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TGYTGAKCTSWGS
AAAATGCTGACT-----
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGYTGAKCTSWGS
CCTGCTGAGH-----
 A C G T A C G T A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T

MAFF/MA0495.1/Jaspar

Match Rank:9
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------TGYTGAKCTSWGS
NAAAANTGCTGACTCAGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C
C G T A C T G A C G T A C G T A C G T A G C A T G C A T C T A G G T A C C G A T A C T G C G T A A T G C G C A T G A T C C G T A C A T G T A G C A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGYTGAKCTSWGS--
NNNGTGACCTTTGNNN
 A C G T A C G T A C T G G A T C A C G T A C T G C G T A A C T G G T A C A C G T T A G C C G A T C T A G A T G C A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A