Information for 4-CDTCTCTCAGTCAAGG (Motif 6)

G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G
Reverse Opposite:
G T A C A G T C A C G T A C G T A C T G C G T A G T A C C G A T A C T G C T G A A T C G C G T A C T A G C G T A G C T A C T A G
p-value:1e-8
log p-value:-2.071e+01
Information Content per bp:1.738
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.37%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.0 +/- 9.9bp
Average Position of motif in Background33.6 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CDTCTCTCAGTCAAGG
--NCTGTCAATCAN--
 G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CDTCTCTCAGTCAAGG
--SCTGTCAVTCAV--
 G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CDTCTCTCAGTCAAGG---
----TCCCAGMCRAGCCCC
 G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CDTCTCTCAGTCAAGG
-GSCTGTCACTCA---
 G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CDTCTCTCAGTCAAGG
ACCACTCTCGGTCAC--
 A C G T G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CDTCTCTCAGTCAAGG
AGTATTCTCGGTTGC--
 A C G T G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CDTCTCTCAGTCAAGG
NNAATTCTCGNTNAN--
 A C G T G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A A C G T A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CDTCTCTCAGTCAAGG--
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G A C G T A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CDTCTCTCAGTCAAGG--
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G A C G T A C G T
G A C T G A C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G C G A T C G A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CDTCTCTCAGTCAAGG
TGTCTGDCACCT----
 G A T C C A G T A C G T A G T C A C G T A T G C A G C T A G T C C G T A A C T G C G A T G T A C G T C A G T C A A C T G A C T G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T