Information for 2-GAGARAGCCACAGGAM (Motif 4)

A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A
Reverse Opposite:
C A G T A C G T A G T C G T A C C G A T A T C G C G A T T C A G A C T G A G T C A C G T A G T C A C G T A T G C G A C T A G T C
p-value:1e-10
log p-value:-2.478e+01
Information Content per bp:1.738
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif6.74%
Number of Background Sequences with motif27.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets37.0 +/- 24.1bp
Average Position of motif in Background50.9 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGARAGCCACAGGAM
AGGTGNCAGACAG-----
 A C G T A C G T A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGARAGCCACAGGAM
AGGTGHCAGACA------
 A C G T A C G T A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAGARAGCCACAGGAM---
---TAAGCCACTTGAAATT
 A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAGARAGCCACAGGAM---
---TAAGCCACTTGAAATT
 A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GAGARAGCCACAGGAM---
---TAAGCCACTTGAATTT
 A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGARAGCCACAGGAM-
-AAACAGACAAAGGAAT
 A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GAGARAGCCACAGGAM
----AAACCACAGAN-
 A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A
A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GAGARAGCCACAGGAM
------GTCACATGAY
 A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GAGARAGCCACAGGAM
GAAAGTGAAAGT--------
 A C G T A C G T A C G T A C G T A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GAGARAGCCACAGGAM----
---ATAACCACTTGAAAATT
 A C T G C G T A A T C G C G T A T C A G C G T A A C T G G T A C A G T C C G T A A T G C C G T A A C T G C T A G G T C A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T