p-value: | 1e-12 |
log p-value: | -2.843e+01 |
Information Content per bp: | 1.911 |
Number of Target Sequences with motif | 4.0 |
Percentage of Target Sequences with motif | 4.49% |
Number of Background Sequences with motif | 1.3 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 59.0 +/- 23.0bp |
Average Position of motif in Background | 69.0 +/- 0.0bp |
Strand Bias (log2 ratio + to - strand density) | 1.0 |
Multiplicity (# of sites on avg that occur together) | 1.50 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer
Match Rank: | 1 |
Score: | 0.60 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -ATGTTAATGCGGGGTC TATGCWAATBAV----- |
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Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer
Match Rank: | 2 |
Score: | 0.59 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -ATGTTAATGCGGGGTC WATGCAAATGAG----- |
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PB0024.1_Gcm1_1/Jaspar
Match Rank: | 3 |
Score: | 0.58 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | ATGTTAATGCGGGGTC-- --NNNNATGCGGGTNNNN |
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PB0025.1_Glis2_1/Jaspar
Match Rank: | 4 |
Score: | 0.58 |
Offset: | 4 |
Orientation: | reverse strand |
Alignment: | ATGTTAATGCGGGGTC---- ----NTNTGGGGGGTCNNNA |
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PB0157.1_Rara_2/Jaspar
Match Rank: | 5 |
Score: | 0.57 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | ATGTTAATGCGGGGTC----- -----AGAGCGGGGTCAAGTA |
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GLIS3/MA0737.1/Jaspar
Match Rank: | 6 |
Score: | 0.56 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | ATGTTAATGCGGGGTC --CTTCGTGGGGGGTC |
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PB0057.1_Rxra_1/Jaspar
Match Rank: | 7 |
Score: | 0.56 |
Offset: | 5 |
Orientation: | reverse strand |
Alignment: | ATGTTAATGCGGGGTC------ -----NTNNNGGGGTCANGNNN |
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PB0010.1_Egr1_1/Jaspar
Match Rank: | 8 |
Score: | 0.56 |
Offset: | 5 |
Orientation: | reverse strand |
Alignment: | ATGTTAATGCGGGGTC--- -----ANTGCGGGGGCGGN |
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GCM2/MA0767.1/Jaspar
Match Rank: | 9 |
Score: | 0.56 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | ATGTTAATGCGGGGTC -----TATGCGGGTA- |
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POU5F1B/MA0792.1/Jaspar
Match Rank: | 10 |
Score: | 0.55 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -ATGTTAATGCGGGGTC TATGCAAAT-------- |
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