Information for 3-TAGATGKCTM (Motif 8)

A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C
Reverse Opposite:
A C T G C G T A A T C G G T A C A G T C C G T A A G C T G A T C A C G T C G T A
p-value:1e-3
log p-value:-7.834e+00
Information Content per bp:1.841
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif4.44%
Number of Background Sequences with motif30.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets67.5 +/- 25.9bp
Average Position of motif in Background53.9 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TAGATGKCTM
GTTAATGGCC-
 A C G T A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TAGATGKCTM
GCTAAACGGT--
 A C G T A C G T A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TAGATGKCTM--
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

PH0082.1_Irx2/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TAGATGKCTM--
ANTNTTACATGTATNTA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

HLTF/MA0109.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TAGATGKCTM
NNATAAGGNN-
 A C G T A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TAGATGKCTM
AACAGATGGC--
 A C G T A C G T A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TAGATGKCTM-
GAAATGACTCA
 A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C A C G T
C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A

Barhl1/MA0877.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TAGATGKCTM
GCTAATTGCT--
 A C G T A C G T A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------TAGATGKCTM-
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TAGATGKCTM--
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G C T G A A C G T A C T G A C T G A T G C A C G T G T A C A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G