Information for 3-GAATTAATGTGAA (Motif 6)

A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
Reverse Opposite:
C A G T A C G T A G T C C G T A A G T C C G T A A G C T A C G T C G T A C G T A A C G T A G C T A G T C
p-value:1e-4
log p-value:-9.211e+00
Information Content per bp:1.928
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif4.44%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.2 +/- 20.6bp
Average Position of motif in Background51.1 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAATTAATGTGAA
NTAATTAATAT---
 A C G T A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAATTAATGTGAA
-AATTAGTG----
 A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAATTAATGTGAA
-AATTATT-----
 A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T

PH0069.1_Hoxc4/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------GAATTAATGTGAA
NNTNNTTAATTAATNCG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
C A G T C G T A A C G T C G A T T C A G G C A T G A C T G T C A C G T A C G A T A C G T C T G A C G T A G A C T C A G T A G T C A C T G A C G T A C G T

PH0011.1_Alx1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------GAATTAATGTGAA
NNNAATTAATTAANGNG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
A C T G G A T C G A T C T C G A T C G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A G A C T C A T G A G T C T C A G A C G T A C G T

PH0099.1_Lhx9/Jaspar

Match Rank:6
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GAATTAATGTGAA
NGTNATTAATTAATGNG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
T C A G T A C G A C G T C T A G G C T A G A C T G A C T T G C A C T G A G A C T A C G T C T G A C T G A G A C T C T A G T A C G C T A G A C G T A C G T

PH0062.1_Hoxb7/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAATTAATGTGAA
GTAGTAATTAATGCAA-
 A C G T A C G T A C G T A C G T A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
A T C G A G C T T G C A A C T G G A C T G T C A G C T A C G A T C A G T C T G A T G C A A C G T C A T G A T G C G C T A C T G A A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAATTAATGTGAA
GATTAATTAATTT---
 A C G T A C G T A C G T A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T A C G T A C G T A C G T

PH0135.1_Phox2a/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GAATTAATGTGAA
NNACTAATTAATNNNN-
 A C G T A C G T A C G T A C G T A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
A T G C A G C T T C G A G A T C A G C T G T C A C G T A A G C T A C G T C T G A C T G A A G C T C A T G T G A C A G C T T C A G A C G T

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAATTAATGTGAA
NNAAGGGATTAACGANT-
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C G T A C G A T A C G T C G T A C T G A A C G T A C T G A C G T A C T G C G T A G C T A
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T A C G T