Information for 3-GAACAATGAGATAGGA (Motif 5)

A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
Reverse Opposite:
A C G T A T G C A G T C A G C T C T G A A C G T A G T C C G A T A G T C C G T A A G C T A C G T C T A G A C G T A C G T A G T C
p-value:1e-6
log p-value:-1.462e+01
Information Content per bp:1.928
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif4.44%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.3 +/- 25.8bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0070.1_Sox30_1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GAACAATGAGATAGGA
AATGAACAATGGAATT---
 A C G T A C G T A C G T A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T A C G T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAACAATGAGATAGGA
TTTAGAACAATAAAAT----
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAACAATGAGATAGGA
GAACAATGGN------
 A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GAACAATGAGATAGGA
NTTNAGAACAATTA-------
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAACAATGAGATAGGA
VRAACAATGG-------
 A C G T A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAACAATGAGATAGGA
GGAACAAAGR-------
 A C G T A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAACAATGAGATAGGA
TTAAGAACAATAAATT----
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAACAATGAGATAGGA
ATAAGAACAAAGGACTA---
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAACAATGAGATAGGA
GAACAATGG-------
 A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAACAATGAGATAGGA
VRRACAAWGG-------
 A C G T A C T G C G T A C G T A A G T C C G T A C T G A A C G T A C T G C G T A A C T G C G T A A G C T C T G A A C T G A T C G C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T